Clone history shapes Populus drought responses.
Identifieur interne : 002F55 ( Main/Exploration ); précédent : 002F54; suivant : 002F56Clone history shapes Populus drought responses.
Auteurs : Sherosha Raj [Canada] ; Katharina Br Utigam ; Erin T. Hamanishi ; Olivia Wilkins ; Barb R. Thomas ; William Schroeder ; Shawn D. Mansfield ; Aine L. Plant ; Malcolm M. CampbellSource :
- Proceedings of the National Academy of Sciences of the United States of America [ 1091-6490 ] ; 2011.
Descripteurs français
- KwdFr :
- ADN des plantes (génétique), ADN des plantes (métabolisme), ARN des plantes (génétique), ARN non traduit (génétique), Acclimatation (génétique), Acclimatation (physiologie), Analyse de profil d'expression de gènes (MeSH), Clonage d'organisme (MeSH), Génotype (MeSH), Hybridation génétique (MeSH), Modèles biologiques (MeSH), Méthylation de l'ADN (MeSH), Populus (génétique), Populus (physiologie), Régions promotrices (génétique) (MeSH), Sécheresses (MeSH), Séquence nucléotidique (MeSH), Écosystème (MeSH).
- MESH :
- génétique : ADN des plantes, ARN des plantes, ARN non traduit, Acclimatation, Populus.
- métabolisme : ADN des plantes.
- physiologie : Acclimatation, Populus.
- Analyse de profil d'expression de gènes, Clonage d'organisme, Génotype, Hybridation génétique, Modèles biologiques, Méthylation de l'ADN, Régions promotrices (génétique), Sécheresses, Séquence nucléotidique, Écosystème.
English descriptors
- KwdEn :
- Acclimatization (genetics), Acclimatization (physiology), Base Sequence (MeSH), Cloning, Organism (MeSH), DNA Methylation (MeSH), DNA, Plant (genetics), DNA, Plant (metabolism), Droughts (MeSH), Ecosystem (MeSH), Gene Expression Profiling (MeSH), Genotype (MeSH), Hybridization, Genetic (MeSH), Models, Biological (MeSH), Populus (genetics), Populus (physiology), Promoter Regions, Genetic (MeSH), RNA, Plant (genetics), RNA, Untranslated (genetics).
- MESH :
- chemical , genetics : DNA, Plant, RNA, Plant, RNA, Untranslated.
- genetics : Acclimatization, Populus.
- chemical , metabolism : DNA, Plant.
- physiology : Acclimatization, Populus.
- Base Sequence, Cloning, Organism, DNA Methylation, Droughts, Ecosystem, Gene Expression Profiling, Genotype, Hybridization, Genetic, Models, Biological, Promoter Regions, Genetic.
Abstract
Just as animal monozygotic twins can experience different environmental conditions by being reared apart, individual genetically identical trees of the genus Populus can also be exposed to contrasting environmental conditions by being grown in different locations. As such, clonally propagated Populus trees provide an opportunity to interrogate the impact of individual environmental history on current response to environmental stimuli. To test the hypothesis that current responses to an environmental stimulus, drought, are contingent on environmental history, the transcriptome- level drought responses of three economically important hybrid genotypes-DN34 (Populus deltoides × Populus nigra), Walker [P. deltoides var. occidentalis × (Populus laurifolia × P. nigra)], and Okanese [Walker × (P. laurifolia × P. nigra)]-derived from two different locations were compared. Strikingly, differences in transcript abundance patterns in response to drought were based on differences in geographic origin of clones for two of the three genotypes. This observation was most pronounced for the genotypes with the longest time since establishment and last common propagation. Differences in genome-wide DNA methylation paralleled the transcriptome level trends, whereby the clones with the most divergent transcriptomes and clone history had the most marked differences in the extent of total DNA methylation, suggesting an epigenomic basis for the clone history-dependent transcriptome divergence. The data provide insights into the interplay between genotype and environment in the ecologically and economically important Populus genus, with implications for the industrial application of Populus trees and the evolution and persistence of these important tree species and their associated hybrids.
DOI: 10.1073/pnas.1103341108
PubMed: 21746919
PubMed Central: PMC3145742
Affiliations:
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Campbell</name></author></analytic><series><title level="j">Proceedings of the National Academy of Sciences of the United States of America</title><idno type="eISSN">1091-6490</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Acclimatization (genetics)</term><term>Acclimatization (physiology)</term><term>Base Sequence (MeSH)</term><term>Cloning, Organism (MeSH)</term><term>DNA Methylation (MeSH)</term><term>DNA, Plant (genetics)</term><term>DNA, Plant (metabolism)</term><term>Droughts (MeSH)</term><term>Ecosystem (MeSH)</term><term>Gene Expression Profiling (MeSH)</term><term>Genotype (MeSH)</term><term>Hybridization, Genetic (MeSH)</term><term>Models, Biological (MeSH)</term><term>Populus (genetics)</term><term>Populus (physiology)</term><term>Promoter Regions, Genetic (MeSH)</term><term>RNA, Plant (genetics)</term><term>RNA, Untranslated (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (génétique)</term><term>ADN des plantes (métabolisme)</term><term>ARN des plantes (génétique)</term><term>ARN non traduit (génétique)</term><term>Acclimatation (génétique)</term><term>Acclimatation (physiologie)</term><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Clonage d'organisme (MeSH)</term><term>Génotype (MeSH)</term><term>Hybridation génétique (MeSH)</term><term>Modèles biologiques (MeSH)</term><term>Méthylation de l'ADN (MeSH)</term><term>Populus (génétique)</term><term>Populus (physiologie)</term><term>Régions promotrices (génétique) (MeSH)</term><term>Sécheresses (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Écosystème (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Plant</term><term>RNA, Plant</term><term>RNA, Untranslated</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Acclimatization</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ADN des plantes</term><term>ARN des plantes</term><term>ARN non traduit</term><term>Acclimatation</term><term>Populus</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>ADN des plantes</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Acclimatation</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Acclimatization</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Cloning, Organism</term><term>DNA Methylation</term><term>Droughts</term><term>Ecosystem</term><term>Gene Expression Profiling</term><term>Genotype</term><term>Hybridization, Genetic</term><term>Models, Biological</term><term>Promoter Regions, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Clonage d'organisme</term><term>Génotype</term><term>Hybridation génétique</term><term>Modèles biologiques</term><term>Méthylation de l'ADN</term><term>Régions promotrices (génétique)</term><term>Sécheresses</term><term>Séquence nucléotidique</term><term>Écosystème</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Just as animal monozygotic twins can experience different environmental conditions by being reared apart, individual genetically identical trees of the genus Populus can also be exposed to contrasting environmental conditions by being grown in different locations. As such, clonally propagated Populus trees provide an opportunity to interrogate the impact of individual environmental history on current response to environmental stimuli. To test the hypothesis that current responses to an environmental stimulus, drought, are contingent on environmental history, the transcriptome- level drought responses of three economically important hybrid genotypes-DN34 (Populus deltoides × Populus nigra), Walker [P. deltoides var. occidentalis × (Populus laurifolia × P. nigra)], and Okanese [Walker × (P. laurifolia × P. nigra)]-derived from two different locations were compared. Strikingly, differences in transcript abundance patterns in response to drought were based on differences in geographic origin of clones for two of the three genotypes. This observation was most pronounced for the genotypes with the longest time since establishment and last common propagation. Differences in genome-wide DNA methylation paralleled the transcriptome level trends, whereby the clones with the most divergent transcriptomes and clone history had the most marked differences in the extent of total DNA methylation, suggesting an epigenomic basis for the clone history-dependent transcriptome divergence. The data provide insights into the interplay between genotype and environment in the ecologically and economically important Populus genus, with implications for the industrial application of Populus trees and the evolution and persistence of these important tree species and their associated hybrids.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21746919</PMID><DateCompleted><Year>2011</Year><Month>10</Month><Day>03</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1091-6490</ISSN><JournalIssue CitedMedium="Internet"><Volume>108</Volume><Issue>30</Issue><PubDate><Year>2011</Year><Month>Jul</Month><Day>26</Day></PubDate></JournalIssue><Title>Proceedings of the National Academy of Sciences of the United States of America</Title><ISOAbbreviation>Proc Natl Acad Sci U S A</ISOAbbreviation></Journal><ArticleTitle>Clone history shapes Populus drought responses.</ArticleTitle><Pagination><MedlinePgn>12521-6</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1073/pnas.1103341108</ELocationID><Abstract><AbstractText>Just as animal monozygotic twins can experience different environmental conditions by being reared apart, individual genetically identical trees of the genus Populus can also be exposed to contrasting environmental conditions by being grown in different locations. As such, clonally propagated Populus trees provide an opportunity to interrogate the impact of individual environmental history on current response to environmental stimuli. To test the hypothesis that current responses to an environmental stimulus, drought, are contingent on environmental history, the transcriptome- level drought responses of three economically important hybrid genotypes-DN34 (Populus deltoides × Populus nigra), Walker [P. deltoides var. occidentalis × (Populus laurifolia × P. nigra)], and Okanese [Walker × (P. laurifolia × P. nigra)]-derived from two different locations were compared. Strikingly, differences in transcript abundance patterns in response to drought were based on differences in geographic origin of clones for two of the three genotypes. This observation was most pronounced for the genotypes with the longest time since establishment and last common propagation. Differences in genome-wide DNA methylation paralleled the transcriptome level trends, whereby the clones with the most divergent transcriptomes and clone history had the most marked differences in the extent of total DNA methylation, suggesting an epigenomic basis for the clone history-dependent transcriptome divergence. The data provide insights into the interplay between genotype and environment in the ecologically and economically important Populus genus, with implications for the industrial application of Populus trees and the evolution and persistence of these important tree species and their associated hybrids.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Raj</LastName><ForeName>Sherosha</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Cell & Systems Biology, University of Toronto, Toronto, ON, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bräutigam</LastName><ForeName>Katharina</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Hamanishi</LastName><ForeName>Erin T</ForeName><Initials>ET</Initials></Author><Author ValidYN="Y"><LastName>Wilkins</LastName><ForeName>Olivia</ForeName><Initials>O</Initials></Author><Author ValidYN="Y"><LastName>Thomas</LastName><ForeName>Barb R</ForeName><Initials>BR</Initials></Author><Author ValidYN="Y"><LastName>Schroeder</LastName><ForeName>William</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Mansfield</LastName><ForeName>Shawn D</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>Plant</LastName><ForeName>Aine L</ForeName><Initials>AL</Initials></Author><Author ValidYN="Y"><LastName>Campbell</LastName><ForeName>Malcolm M</ForeName><Initials>MM</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>07</Month><Day>11</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Proc Natl Acad Sci U S 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Organism</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019175" MajorTopicYN="N">DNA Methylation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D055864" MajorTopicYN="N">Droughts</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017753" MajorTopicYN="N">Ecosystem</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="N">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006824" MajorTopicYN="N">Hybridization, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008954" MajorTopicYN="N">Models, 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uniqKey="Br Utigam K" first="Katharina" last="Br Utigam">Katharina Br Utigam</name><name sortKey="Campbell, Malcolm M" sort="Campbell, Malcolm M" uniqKey="Campbell M" first="Malcolm M" last="Campbell">Malcolm M. Campbell</name><name sortKey="Hamanishi, Erin T" sort="Hamanishi, Erin T" uniqKey="Hamanishi E" first="Erin T" last="Hamanishi">Erin T. Hamanishi</name><name sortKey="Mansfield, Shawn D" sort="Mansfield, Shawn D" uniqKey="Mansfield S" first="Shawn D" last="Mansfield">Shawn D. Mansfield</name><name sortKey="Plant, Aine L" sort="Plant, Aine L" uniqKey="Plant A" first="Aine L" last="Plant">Aine L. Plant</name><name sortKey="Schroeder, William" sort="Schroeder, William" uniqKey="Schroeder W" first="William" last="Schroeder">William Schroeder</name><name sortKey="Thomas, Barb R" sort="Thomas, Barb R" uniqKey="Thomas B" first="Barb R" last="Thomas">Barb R. Thomas</name><name sortKey="Wilkins, Olivia" sort="Wilkins, Olivia" uniqKey="Wilkins O" first="Olivia" last="Wilkins">Olivia Wilkins</name></noCountry><country name="Canada"><region name="Ontario"><name sortKey="Raj, Sherosha" sort="Raj, Sherosha" uniqKey="Raj S" first="Sherosha" last="Raj">Sherosha Raj</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002F55 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002F55 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:21746919
|texte= Clone history shapes Populus drought responses.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:21746919" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |